spacemake
dev
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A
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C
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D
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F
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G
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H
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I
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L
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M
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N
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P
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Q
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R
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S
A
add_sample_sheet() (spacemake.project_df.ProjectDF method)
add_sample_sheet_cmdline() (in module spacemake.project_df)
add_samples_from_yaml() (spacemake.project_df.ProjectDF method)
add_samples_from_yaml_cmdline() (in module spacemake.project_df)
add_update_delete_sample_cmdline() (in module spacemake.project_df)
add_update_sample() (spacemake.project_df.ProjectDF method)
align_he_aggregated_img() (in module spacemake.spatial.he_integration)
align_he_spot_img() (in module spacemake.spatial.he_integration)
assert_projects_samples_exist() (spacemake.project_df.ProjectDF method)
attach_he_adata() (in module spacemake.spatial.he_integration)
C
compute_max_barcode_mismatch() (spacemake.project_df.ProjectDF method)
D
delete_sample() (spacemake.project_df.ProjectDF method)
dump() (spacemake.project_df.ProjectDF method)
F
find_barcode_file() (spacemake.project_df.ProjectDF method)
G
get_action_sample_parser() (in module spacemake.project_df)
get_add_sample_sheet_parser() (in module spacemake.project_df)
get_data_parser() (in module spacemake.project_df)
get_ix_from_project_sample_list() (spacemake.project_df.ProjectDF method)
get_metadata() (spacemake.project_df.ProjectDF method)
get_project_sample_parser() (in module spacemake.project_df)
get_puck_variables() (spacemake.project_df.ProjectDF method)
get_sample_info() (spacemake.project_df.ProjectDF method)
get_set_remove_variable_subparsers() (in module spacemake.project_df)
H
hamming_distance() (spacemake.project_df.ProjectDF method)
has_dge() (spacemake.project_df.ProjectDF method)
I
is_external() (spacemake.project_df.ProjectDF method)
is_spatial() (spacemake.project_df.ProjectDF method)
L
list_projects_cmdline() (in module spacemake.project_df)
load_processed_adata() (spacemake.Spacemake method)
load_raw_spatial_adata() (spacemake.Spacemake method)
M
merge_samples() (spacemake.project_df.ProjectDF method)
merge_samples_cmdline() (in module spacemake.project_df)
module
spacemake.config
spacemake.project_df
N
novosparc_denovo() (in module spacemake.spatial.novosparc_integration)
novosparc_mapping() (in module spacemake.spatial.novosparc_integration)
P
ProjectDF (class in spacemake.project_df)
Q
quantify_clusters_spatially() (in module spacemake.spatial.novosparc_integration)
R
remove_variable() (spacemake.project_df.ProjectDF method)
S
sample_exists() (spacemake.project_df.ProjectDF method)
save_novosparc_res() (in module spacemake.spatial.novosparc_integration)
set_remove_variable() (spacemake.project_df.ProjectDF method)
set_remove_variable_cmdline() (in module spacemake.project_df)
set_variable() (spacemake.project_df.ProjectDF method)
setup_project_parser() (in module spacemake.project_df)
Spacemake (class in spacemake)
spacemake.config
module
spacemake.project_df
module
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