spacemake
0.9.1b
Installation
Using apptainer (recommended)
Installing via conda and pip
Quick start guide
Initialization
Configuration
Manage projects and samples
Running spacemake
Migrate
Tutorials
Troubleshooting
API and Internal API
Release notes
spacemake
Index
Index
A
|
C
|
D
|
F
|
G
|
H
|
I
|
L
|
M
|
P
|
R
|
S
A
add_sample_sheet() (spacemake.project_df.ProjectDF method)
add_samples_from_yaml() (spacemake.project_df.ProjectDF method)
add_update_sample() (spacemake.project_df.ProjectDF method)
assert_projects_samples_exist() (spacemake.project_df.ProjectDF method)
assert_valid() (spacemake.project_df.ProjectDF method)
C
compute_max_barcode_mismatch() (spacemake.project_df.ProjectDF method)
D
delete_sample() (spacemake.project_df.ProjectDF method)
dump() (spacemake.project_df.ProjectDF method)
F
find_barcode_file() (spacemake.project_df.ProjectDF method)
G
get_ix_from_project_sample_list() (spacemake.project_df.ProjectDF method)
get_metadata() (spacemake.project_df.ProjectDF method)
get_puck() (spacemake.project_df.ProjectDF method)
get_puck_variables() (spacemake.project_df.ProjectDF method)
get_sample_info() (spacemake.project_df.ProjectDF method)
get_species_parser() (in module spacemake.config)
H
hamming_distance() (spacemake.project_df.ProjectDF method)
has_dge() (spacemake.project_df.ProjectDF method)
I
is_external() (spacemake.project_df.ProjectDF method)
is_spatial() (spacemake.project_df.ProjectDF method)
L
load_processed_adata() (spacemake.smk.Spacemake method)
load_raw_spatial_adata() (spacemake.smk.Spacemake method)
M
merge_samples() (spacemake.project_df.ProjectDF method)
module
spacemake.config
spacemake.project_df
P
ProjectDF (class in spacemake.project_df)
R
remove_variable() (spacemake.project_df.ProjectDF method)
S
sample_exists() (spacemake.project_df.ProjectDF method)
set_remove_variable() (spacemake.project_df.ProjectDF method)
set_variable() (spacemake.project_df.ProjectDF method)
Spacemake (class in spacemake.smk)
spacemake.config
module
spacemake.project_df
module